PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678292685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 245aa    MW: 26656.2 Da    PI: 8.8319
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678292685genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-324499359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 k++YkeClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC CHRnFHR+e++ 
    678292685 44 KITYKECLKNHAANIGGNVTDGCGEFMPS-GEEGTLEALKCAACSCHRNFHRKEPTA 99
                 789*************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-304597IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-304696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5054796IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-214797IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.02E-18161230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-31164231IPR009057Homeodomain-like
TIGRFAMsTIGR015657.9E-31173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMSLPGEDKE IRMPGGGGYA LEIPPEKARI LESSGGIKVS NAAKITYKEC LKNHAANIGG  60
NVTDGCGEFM PSGEEGTLEA LKCAACSCHR NFHRKEPTAT AMVHPLHFPA PIPSAPMIHH  120
RIGGAHWNPM AQPVKVAFPG GGSGGTDSSS EELNFNTFNS TPVTPPPPQT ATKKRFRTKF  180
TAEQKEKMQE FAEKLGWRIP REDDSEVQRF CAEVGVKRQV FKVWMHNNKS SSSSASATKK  240
NPQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-261722351679ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083674.11e-110PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9M9S02e-60ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLS8C3822e-94S8C382_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc04g080490.2.11e-77(Solanum lycopersicum)
STRINGPGSC0003DMT4000095811e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-49homeobox protein 31